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Chemical Drawing Atlas

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Molecule Clipboard

Browser tool for drawing, editing, inspecting, and sharing individual molecules.

WebsiteManualGitHub

Open source. 19 of 65 checklist features confirmed.

Main canvas

Molecule Clipboard main canvas, light mode
light mode

No dark mode

dark mode

Default drawings

caffeine as drawn by Molecule Clipboard with default settings

Caffeine

paclitaxel as drawn by Molecule Clipboard with default settings

Paclitaxel

No 3D view

Cholesterol in 3D

Facts

GitHub stars
3 stars on 6 Nov 2026
First commit
28 Dec 2025
Repository activity
27 commits, 2 contributors, last push 4 Jan 2026
Latest version
v0.4.0
Version we tested
6e00a7d
Runs on
Browser, iOS, Android
License
MIT project; JSME and RDKit have separate BSD licenses.
Price
Free
Relies on
JSME, RDKit. Mounts JSME directly; RDKit handles depiction, identifiers, properties, and conversions.
Draws with
JSME SVG editor; RDKit.js SVG depiction/export; HTML Canvas 2D for PNG.
Chemistry from
RDKit.js (WebAssembly) and JSME
Interface
Plain HTML/CSS/JavaScript with JSME JSApplet
Main language
Java (compiled to JavaScript); C++ (WebAssembly)
Other languages
JavaScript: Application logic and export handling
Renderer
Borrowed: JSME editor; RDKit MolDraw2D depiction/export
Third-party licenses
BSD-3-Clause/Apache-2.0 components; legacy InChI-Trust Licence 1.0 copyleft (InChI 1.05); OFL-1.1 Telex font (font-only share-alike).
Download
0.0 MB

In use

Screenshots from our test of this version.

Features

  • Tested by running it
  • Seen in the app
  • The manual says yes
  • Partly, with the reason shown
  • Not supported
  • Not established, which is not the same as no

Select a mark for its proof. A filled mark opens our screenshot, or the manual if the check left nothing to picture. A ring opens the manual.

Drawing structures

APIs and automation

Embedding and extension

Open the full pageManual